PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496725.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 542aa    MW: 57219.6 Da    PI: 8.663
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.3e-08205249144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++ Ed  l+ av++ G g+W+ I +      Rt+ q+  rw
   XP_016496725.1 205 RKPWSETEDMELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 249
                      789************************984222488888888888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.537200257IPR017930Myb domain
SuperFamilySSF466892.15E-12201255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-13201252IPR009057Homeodomain-like
SMARTSM007171.1E-8204255IPR001005SANT/Myb domain
PfamPF002497.0E-7205249IPR001005SANT/Myb domain
CDDcd116604.74E-14206254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MFEKSKKQKC FVTEEDISTL LQRYNATTVL GVLGEVAAQV AADDKIDWNA LVKKSTTGIT  60
NAREYQMLWR HLAYRHGLLD KLDDAAQPLD DDSDLEYELE AFPTVSNEAS AEAAACVKVL  120
IASGVPNDTN MLNGSTVEAP LTINIPNVQT SRTGVDNSLH GTSIHGTNIT VPVAVQKQPF  180
STVAAAEGLD THGPACTNLP PRRKRKPWSE TEDMELIAAV QKCGEGNWAN ILKGDFKGDR  240
TASQLSQRWA IIRKRQGTMV GNGSQLSEAQ LATRRAMSLA LNMPMGDNLK AACPISVSVG  300
QNSGARPSNC SHSVVADFAS VGAQSQHQQD PLSSKPRIVP KKPLPKPNTS PDSMVKVAAV  360
AAGARVATPS NGASLLKTVE SKSAVQLPGG GPAVKSHVPV STNGLPSNVH FIRTGLVSHS  420
TVPSNASRPG TQQVLGHSLK RVSPAFQLSP AGTSSRPNAS AAPNAPICAP VAELDDTKQK  480
LLQKSQTTAL SSAQSEKQVG VVGASGDKAL PPQGQQEKLP ASSNPLIEKV EDQTLSFSDE  540
VK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206PRRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496725.10.0PREDICTED: uncharacterized protein LOC107815624
TrEMBLA0A0V0ILC60.0A0A0V0ILC6_SOLCH; Putative ovule protein
STRINGSolyc12g087970.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34342237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-75MYB_related family protein